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5 Best E-commerce Help Desks for Customer Service

Digital character reviewing customer experience to make improvements

Providing exceptional customer service is paramount to success. With customers expecting quick responses and resolutions to their inquiries, an efficient help desk system is crucial. But with so many options available, how do you choose the best help desk for your e-commerce business? 

Here, we’ll explore the key factors to consider and recommend some top help desk solutions specifically tailored for e-commerce customer service.

Table of Contents
What is a help desk?
Do all e-commerce businesses need a help desk?
Understanding the importance of a help desk for e-commerce
7 key factors to consider when choosing a help desk
Top help desk solutions for e-commerce customer service
Final thoughts

What is a help desk?

A help desk is a centralized system or platform designed to manage and address customer inquiries, issues, and support requests. It serves as a primary point of contact for customers seeking assistance with products, services, or technical problems. Help desks typically utilize various communication channels, such as email, live chat, phone support, social media, and self-service portals, to interact with customers and provide timely resolutions to their queries.

Do all e-commerce businesses need a help desk?

Now, as for whether all e-commerce businesses need a help desk, the answer largely depends on the scale and complexity of the business, as well as its commitment to providing exceptional customer service. Here are some factors to consider:

  1. Volume of customer inquiries: E-commerce businesses that receive a high volume of inquiries may benefit from a help desk to effectively manage and prioritize these requests. 
  2. Complexity of products or services: If your business sells complex products or services that require ongoing support and troubleshooting, a help desk can facilitate communication between customers and support agents, leading to quicker resolutions and improved customer satisfaction.
  3. Desire for scalability and efficiency: As e-commerce businesses grow, so do their customer service needs. A help desk provides scalability and efficiency by streamlining communication, automating repetitive tasks, and providing insights into customer interactions.

While smaller e-commerce businesses may initially manage customer inquiries through email or social media, as they grow, investing in a dedicated help desk becomes increasingly important for managing the volume and complexity of customer support interactions. Ultimately, a help desk can play a crucial role in enhancing the overall customer experience and driving success in the competitive e-commerce landscape.

Understanding the importance of a help desk for e-commerce

Quality assurance analyst reviewing customer support interactions

Before delving into the specifics of choosing a help desk, let’s first understand why it’s essential for e-commerce businesses.

  • Centralized communication: A help desk is a centralized platform for managing customer inquiries across various channels, including email, chat, social media, and more. This ensures every customer query is answered and prevents issues from falling through the cracks.
  • Efficiency and productivity: By streamlining communication and automating repetitive tasks, a help desk can significantly improve the efficiency and productivity of your customer service team. This allows them to handle a higher volume of inquiries without sacrificing quality.
  • Enhanced customer experience: Quick response times and personalized support are crucial for an exceptional customer experience. A well-implemented help desk can help you meet and exceed customer expectations, increasing satisfaction and loyalty.
  • Data and insights: Many help desk solutions offer analytics and reporting features that provide valuable insights into customer behavior, common issues, and team performance. By leveraging this data, e-commerce businesses can make informed decisions to optimize their customer service processes.

7 key factors to consider when choosing a help desk

Integration of chatbot, email, and phone in customer service

We know help desks can make a significant difference for e-commerce businesses like yours when managing customer service inquiries, but how do you know which is best for your business?

Your business is unique and has specific needs when it comes to a help desk, so here are some key factors to consider when choosing the right solution for your business:

1. Multichannel support

Look for a help desk that supports multiple communication channels, including email, live chat, social media, and phone support. This ensures you can meet your customers wherever they are and provide a seamless experience across channels.

2. Automation and workflow management

Automation capabilities such as ticket routing, canned responses, and chatbots can help streamline customer service processes and improve efficiency.

Similarly, robust workflow management features allow you to prioritize and assign tasks effectively.

3. Integration with e-commerce platforms

Choose a help desk that integrates seamlessly with your e-commerce platform, whether it’s Shopify, WooCommerce, Magento, or others. This integration enables you to access relevant customer data and order information directly from the help desk, providing context for faster resolutions.

4. Scalability and flexibility

As your e-commerce business grows, so will your customer service needs. Select a help desk solution that can scale with your business and adapt to changing requirements. 

Additionally, flexibility in customization and configuration ensures that the help desk can be tailored to suit your specific workflows and preferences.

5. Reporting and analytics

Insights derived from reporting and analytics are invaluable for optimizing your customer service operations. Look for a help desk that offers comprehensive reporting capabilities, including metrics like response time, resolution rate, customer satisfaction scores, and more.

6. Security and compliance

Protecting sensitive customer data is paramount for e-commerce businesses, especially with the increasing prevalence of data breaches and privacy regulations. Choose a help desk that prioritizes security and compliance, with features such as data encryption, role-based access controls, and GDPR compliance.

7. Customer experience features

In addition to resolving issues, your help desk should also focus on enhancing the overall customer experience. Features like self-service portals, knowledge bases, and community forums empower customers to find answers to common questions independently, reducing the workload on your support team.

Top help desk solutions for e-commerce customer service

Now, what you’ve been waiting for! Here are some of the top help desk solutions tailored specifically for e-commerce customer service.


Zendesk is a popular help desk solution known for its user-friendly interface and extensive feature set. It offers multi-channel support, automation capabilities, robust reporting, and seamless integrations with e-commerce platforms like Shopify and Magento.

Many reviews state that there isn’t anything Zendesk can’t do.

Cost: Starting at US $19 per agent per month. 


Freshdesk is another leading help desk platform that caters to the needs of e-commerce businesses. It offers a range of features, including ticket management, live chat, AI-powered chatbots, and e-commerce integrations.

Freshdesk is known for its affordability and scalability, making it suitable for businesses of all sizes. However, where Freshdesk shines is in phone support; they have advanced phone management features.

Cost: Starting at US $15 per agent per month.


Gorgias is a help desk specifically designed for e-commerce merchants. It integrates seamlessly with platforms like Shopify, WooCommerce, and Magento, providing access to order information and customer data directly within the help desk interface.

Gorgias also offers advanced automation capabilities and personalized customer support features.

Their pricing structure may be a concern for some teams because it’s based on volume, meaning the costs could vary from month to month, which may be challenging for some teams.

Cost: Starting at US $10 per month (includes 3 user seats and 50 billable tickets).

Help Scout

Help Scout is a help desk solution focused on simplicity and ease of use. While it may not have as many advanced features as other platforms, it excels at providing a seamless customer experience. The shared inbox tool makes managing customer service inquiries across multiple channels seamless, and with saved replies, you can answer common requests even faster. 

Help Scout offers email-based support, knowledge base management, and integrations with e-commerce platforms like Shopify and WooCommerce.

Cost: Starting at US $20 per user per month.

HubSpot Service Hub

If you’re already using HubSpot for sales and marketing, HubSpot Service Hub could be a great product for you. It includes customer service support tools like a shared inbox and live chat software, and the higher-tier plans also include a knowledge base builder. 

Cost: Starting at US $45 per month, with two users included.

Final thoughts

Choosing the best help desk for e-commerce customer service requires careful consideration of factors such as multichannel support, automation capabilities, integration with e-commerce platforms, scalability, and security. By evaluating these factors and selecting a solution that aligns with your business needs, you can ensure efficient and effective customer support that drives satisfaction and loyalty. 

Whether you opt for a comprehensive platform like Zendesk or a specialized solution like Gorgias, investing in the right help desk is essential for success in the competitive world of e-commerce.

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